root/Documentation/Diagrams/Historic/DataModel2005Proposal/FlatBoundingBox.ome
| Revision 202, 8.2 kB (checked in by andrew, 4 months ago) |
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| 1 | <?xml version = "1.0" encoding = "UTF-8"?> |
| 2 | <!-- |
| 3 | #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 4 | # |
| 5 | # Copyright (C) 2003 Open Microscopy Environment |
| 6 | # Massachusetts Institue of Technology, |
| 7 | # National Institutes of Health, |
| 8 | # University of Dundee |
| 9 | # |
| 10 | # |
| 11 | # |
| 12 | # This library is free software; you can redistribute it and/or |
| 13 | # modify it under the terms of the GNU Lesser General Public |
| 14 | # License as published by the Free Software Foundation; either |
| 15 | # version 2.1 of the License, or (at your option) any later version. |
| 16 | # |
| 17 | # This library is distributed in the hope that it will be useful, |
| 18 | # but WITHOUT ANY WARRANTY; without even the implied warranty of |
| 19 | # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
| 20 | # Lesser General Public License for more details. |
| 21 | # |
| 22 | # You should have received a copy of the GNU Lesser General Public |
| 23 | # License along with this library; if not, write to the Free Software |
| 24 | # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA |
| 25 | # |
| 26 | #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 27 | --> |
| 28 | |
| 29 | <!-- |
| 30 | #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 31 | # Written by: Josiah Johnston <siah@nih.gov> |
| 32 | #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 33 | --> |
| 34 | |
| 35 | <OME |
| 36 | xmlns= |
| 37 | "http://www.openmicroscopy.org/XMLschemas/OME/FC/ome.xsd" |
| 38 | xmlns:xsi= |
| 39 | "http://www.w3.org/2001/XMLSchema-instance" |
| 40 | xmlns:STD= |
| 41 | "http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd" |
| 42 | xsi:schemaLocation = " |
| 43 | http://www.openmicroscopy.org/XMLschemas/OME/FC/ome.xsd |
| 44 | http://www.openmicroscopy.org/XMLschemas/OME/FC/ome.xsd |
| 45 | http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd |
| 46 | http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd"> |
| 47 | |
| 48 | <SemanticTypeDefinitions xmlns="http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd" xsi:schemaLocation="http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd"> |
| 49 | <SemanticType |
| 50 | Name= "RegionUnion" |
| 51 | AppliesTo = "F"> |
| 52 | <Description>A set of BoundingBox's that may be discontinuous. Can be |
| 53 | used to track a cell's progeny over time and space.</Description> |
| 54 | <Element |
| 55 | Name= "Name" |
| 56 | DBLocation = "RegionUnion.Name" |
| 57 | DataType = "string"/> |
| 58 | </SemanticType> |
| 59 | <SemanticType |
| 60 | Name = "RegionUnionComments" |
| 61 | AppliesTo = "F"> |
| 62 | <Description>Comments about a RegionUnion.</Description> |
| 63 | <Element |
| 64 | Name= "Title" |
| 65 | DBLocation = "RegionUnionComments.Title" |
| 66 | DataType = "string"/> |
| 67 | <Element |
| 68 | Name= "Comments" |
| 69 | DBLocation = "RegionUnionComments.Comments" |
| 70 | DataType = "string"/> |
| 71 | <Element |
| 72 | Name = "RegionUnion" |
| 73 | DBLocation = "RegionUnionComments.RegionUnion" |
| 74 | DataType = "reference" |
| 75 | RefersTo = "RegionUnion"/> |
| 76 | </SemanticType> |
| 77 | |
| 78 | <SemanticType |
| 79 | Name = "RegionUnionBoundingBox" |
| 80 | AppliesTo = "F"> |
| 81 | <Description>A mapping class between RegionUnion's and BoundingBox's.</Description> |
| 82 | <Element |
| 83 | Name = "RegionUnion" |
| 84 | DBLocation = "RegionUnionBoundingBox.RegionUnion" |
| 85 | DataType = "reference" |
| 86 | RefersTo = "RegionUnion"/> |
| 87 | <Element |
| 88 | Name = "BoundingBox" |
| 89 | DBLocation = "RegionUnionBoundingBox.BoundingBox" |
| 90 | DataType = "reference" |
| 91 | RefersTo = "BoundingBox"/> |
| 92 | </SemanticType> |
| 93 | |
| 94 | |
| 95 | <SemanticType |
| 96 | Name = "BoundingBox" |
| 97 | AppliesTo = "F"> |
| 98 | <Description>A bounded region that has dimensionality of two or |
| 99 | greater. The 5-D bounding box is stored here, and the |
| 100 | particulars of a shape that fit within the box are stored |
| 101 | separately. A null entry in the extent of any dimension |
| 102 | means that this BoundedRegion exists across every point |
| 103 | in that dimension.</Description> |
| 104 | <Element |
| 105 | Name = "StartX" |
| 106 | DBLocation = "BoundingBox.StartX" |
| 107 | DataType = "integer"/> |
| 108 | <Element |
| 109 | Name = "EndX" |
| 110 | DBLocation = "BoundingBox.EndX" |
| 111 | DataType = "integer"/> |
| 112 | <Element |
| 113 | Name = "StartY" |
| 114 | DBLocation = "BoundingBox.StartY" |
| 115 | DataType = "integer"/> |
| 116 | <Element |
| 117 | Name = "EndY" |
| 118 | DBLocation = "BoundingBox.EndY" |
| 119 | DataType = "integer"/> |
| 120 | <Element |
| 121 | Name = "StartZ" |
| 122 | DBLocation = "BoundingBox.StartZ" |
| 123 | DataType = "integer"/> |
| 124 | <Element |
| 125 | Name = "EndZ" |
| 126 | DBLocation = "BoundingBox.EndZ" |
| 127 | DataType = "integer"/> |
| 128 | <Element |
| 129 | Name = "StartT" |
| 130 | DBLocation = "BoundingBox.StartT" |
| 131 | DataType = "integer"/> |
| 132 | <Element |
| 133 | Name = "EndT" |
| 134 | DBLocation = "BoundingBox.EndT" |
| 135 | DataType = "integer"/> |
| 136 | <Element |
| 137 | Name = "StartC" |
| 138 | DBLocation = "BoundingBox.StartC" |
| 139 | DataType = "integer"/> |
| 140 | <Element |
| 141 | Name = "EndC" |
| 142 | DBLocation = "BoundingBox.EndC" |
| 143 | DataType = "integer"/> |
| 144 | <!-- Really, this ShapeType should reference OME::SemanticType --> |
| 145 | <Element |
| 146 | Name = "ShapeType" |
| 147 | DBLocation = "BoundingBox.ShapeType" |
| 148 | DataType = "string"/> |
| 149 | <Element |
| 150 | Name = "ShapeID" |
| 151 | DBLocation = "BoundingBox.ShapeID" |
| 152 | DataType = "integer"/> |
| 153 | </SemanticType> |
| 154 | |
| 155 | <SemanticType |
| 156 | Name = "BoundingBoxComments" |
| 157 | AppliesTo = "F"> |
| 158 | <Description>Comments about a BoundingBox.</Description> |
| 159 | <Element |
| 160 | Name= "Title" |
| 161 | DBLocation = "BoundingBoxComments.Title" |
| 162 | DataType = "string"/> |
| 163 | <Element |
| 164 | Name= "Comments" |
| 165 | DBLocation = "BoundingBoxComments.Comments" |
| 166 | DataType = "string"/> |
| 167 | <Element |
| 168 | Name = "BoundingBox" |
| 169 | DBLocation = "BoundingBoxComments.BoundingBox" |
| 170 | DataType = "reference" |
| 171 | RefersTo = "BoundingBox"/> |
| 172 | </SemanticType> |
| 173 | |
| 174 | <SemanticType |
| 175 | Name = "BoundingBoxSubsampleTime" |
| 176 | AppliesTo = "F"> |
| 177 | <Description>A member of a set of sub-sampled timepoints.</Description> |
| 178 | <Element |
| 179 | Name = "TheT" |
| 180 | DBLocation = "BoundingBoxSubsampleTime.TheT" |
| 181 | DataType = "integer"/> |
| 182 | <Element |
| 183 | Name = "BoundingBox" |
| 184 | DBLocation = "BoundingBoxSubsampleTime.BoundingBox" |
| 185 | DataType = "reference" |
| 186 | RefersTo = "BoundingBox"/> |
| 187 | </SemanticType> |
| 188 | |
| 189 | <SemanticType |
| 190 | Name = "BoundingBoxSubsampleChannel" |
| 191 | AppliesTo = "F"> |
| 192 | <Description>A member of a set of sub-sampled Channels.</Description> |
| 193 | <Element |
| 194 | Name = "TheC" |
| 195 | DBLocation = "BoundingBoxSubsampleChannel.TheC" |
| 196 | DataType = "integer"/> |
| 197 | <Element |
| 198 | Name = "BoundingBox" |
| 199 | DBLocation = "BoundingBoxSubsampleChannel.BoundingBox" |
| 200 | DataType = "reference" |
| 201 | RefersTo = "BoundingBox"/> |
| 202 | </SemanticType> |
| 203 | |
| 204 | <SemanticType |
| 205 | Name = "Circle" |
| 206 | AppliesTo = "F"> |
| 207 | <Description>A Shape ST to accompany a BoundedRegion.</Description> |
| 208 | <Element |
| 209 | Name= "CenterX" |
| 210 | DBLocation = "BoundingBoxCircle.CenterX" |
| 211 | DataType = "integer"/> |
| 212 | <Element |
| 213 | Name= "CenterY" |
| 214 | DBLocation = "BoundingBoxCircle.CenterY" |
| 215 | DataType = "integer"/> |
| 216 | <Element |
| 217 | Name= "Radius" |
| 218 | DBLocation = "BoundingBoxCircle.Radius" |
| 219 | DataType = "float"/> |
| 220 | </SemanticType> |
| 221 | |
| 222 | <!-- NOTE: This ST needs to be merged with the existing BinaryMask. |
| 223 | The existing BinaryMask needs to be placed in its own table, |
| 224 | and its description needs to be generalized. --> |
| 225 | <SemanticType |
| 226 | Name = "BoundingBoxBinaryMask" |
| 227 | AppliesTo = "F"> |
| 228 | <Description>A mask that matches the dimensionality of the |
| 229 | accompanying Bounded Region.</Description> |
| 230 | <Element |
| 231 | Name="Parent" |
| 232 | DBLocation="BoundingBoxBinaryMask.Parent" |
| 233 | DataType="reference" |
| 234 | RefersTo="Pixels"/> |
| 235 | </SemanticType> |
| 236 | |
| 237 | <SemanticType |
| 238 | Name = "Polygon" |
| 239 | AppliesTo = "F"> |
| 240 | <Description>A Shape ST to accompany a BoundingRegion.</Description> |
| 241 | <Element |
| 242 | Name = "NumPoints" |
| 243 | DBLocation = "BoundingBoxPolygon.NumPoints" |
| 244 | DataType = "integer"/> |
| 245 | </SemanticType> |
| 246 | <SemanticType |
| 247 | Name = "PolygonPoint" |
| 248 | AppliesTo = "F"> |
| 249 | <Description>A spacial point existing independently of channels. |
| 250 | Coordinates are in absolute units.</Description> |
| 251 | <Element |
| 252 | Name = "Order" |
| 253 | DBLocation = "PolygonPoint.PolygonOrder" |
| 254 | DataType = "integer"/> |
| 255 | <Element |
| 256 | Name = "TheX" |
| 257 | DBLocation = "PolygonPoint.TheX" |
| 258 | DataType = "integer"/> |
| 259 | <Element |
| 260 | Name = "TheY" |
| 261 | DBLocation = "PolygonPoint.TheY" |
| 262 | DataType = "integer"/> |
| 263 | <Element |
| 264 | Name = "TheZ" |
| 265 | DBLocation = "PolygonPoint.TheZ" |
| 266 | DataType = "integer"/> |
| 267 | <Element |
| 268 | Name = "TheT" |
| 269 | DBLocation = "PolygonPoint.TheT" |
| 270 | DataType = "integer"/> |
| 271 | <Element |
| 272 | Name = "Polygon" |
| 273 | DBLocation = "PolygonPoint.Polygon" |
| 274 | DataType = "reference" |
| 275 | RefersTo = "Polygon"/> |
| 276 | </SemanticType> |
| 277 | |
| 278 | |
| 279 | |
| 280 | </SemanticTypeDefinitions> |
| 281 | </OME> |
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