root/Documentation/Diagrams/Historic/DataModel2005Proposal/D_ScreenProposal.ome
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| 1 | <?xml version = "1.0" encoding = "UTF-8"?> |
| 2 | <!-- |
| 3 | #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 4 | # |
| 5 | # Copyright (C) 2003 Open Microscopy Environment |
| 6 | # Massachusetts Institue of Technology, |
| 7 | # National Institutes of Health, |
| 8 | # University of Dundee |
| 9 | # |
| 10 | # |
| 11 | # |
| 12 | # This library is free software; you can redistribute it and/or |
| 13 | # modify it under the terms of the GNU Lesser General Public |
| 14 | # License as published by the Free Software Foundation; either |
| 15 | # version 2.1 of the License, or (at your option) any later version. |
| 16 | # |
| 17 | # This library is distributed in the hope that it will be useful, |
| 18 | # but WITHOUT ANY WARRANTY; without even the implied warranty of |
| 19 | # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
| 20 | # Lesser General Public License for more details. |
| 21 | # |
| 22 | # You should have received a copy of the GNU Lesser General Public |
| 23 | # License along with this library; if not, write to the Free Software |
| 24 | # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA |
| 25 | # |
| 26 | #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 27 | --> |
| 28 | |
| 29 | <!-- |
| 30 | #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 31 | # Written by: Josiah Johnston <siah@nih.gov> |
| 32 | # based on proposals put forth by Doug Creager |
| 33 | #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
| 34 | --> |
| 35 | |
| 36 | <OME |
| 37 | xmlns= |
| 38 | "http://www.openmicroscopy.org/XMLschemas/OME/FC/ome.xsd" |
| 39 | xmlns:xsi= |
| 40 | "http://www.w3.org/2001/XMLSchema-instance" |
| 41 | xmlns:STD= |
| 42 | "http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd" |
| 43 | xsi:schemaLocation = " |
| 44 | http://www.openmicroscopy.org/XMLschemas/OME/FC/ome.xsd |
| 45 | http://www.openmicroscopy.org/XMLschemas/OME/FC/ome.xsd |
| 46 | http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd |
| 47 | http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd"> |
| 48 | |
| 49 | <SemanticTypeDefinitions xmlns="http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd" xsi:schemaLocation="http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd http://www.openmicroscopy.org/XMLschemas/STD/RC2/STD.xsd"> |
| 50 | <SemanticType Name= "Screen" AppliesTo = "D"> |
| 51 | <Description>Stores information about a high-throughput screen.</Description> |
| 52 | <Element Name= "Name" DBLocation = "SCREENS.NAME" DataType = "string"/> |
| 53 | <Element |
| 54 | Name= "Description" |
| 55 | DBLocation = "SCREENS.DESCRIPTION" |
| 56 | DataType = "string"/> |
| 57 | <Element |
| 58 | Name= "ExternalReference" |
| 59 | DBLocation = "SCREENS.EXTERNAL_REFERENCE" |
| 60 | DataType = "string"/> |
| 61 | </SemanticType> |
| 62 | |
| 63 | <SemanticType |
| 64 | Name= "PlateScreen" |
| 65 | AppliesTo = "G"> |
| 66 | <Description>Defines the relationship between Plates and Screens.</Description> |
| 67 | <Element |
| 68 | Name= "Plate" |
| 69 | DBLocation = "PLATE_SCREEN_MAP.PLATE" |
| 70 | DataType = "reference" |
| 71 | RefersTo = "Plate"/> |
| 72 | <Element |
| 73 | Name= "Screen" |
| 74 | DBLocation = "PLATE_SCREEN_MAP.SCREEN" |
| 75 | DataType = "reference" |
| 76 | RefersTo = "Screen"/> |
| 77 | </SemanticType> |
| 78 | |
| 79 | <SemanticType |
| 80 | Name= "Plate" |
| 81 | AppliesTo = "D"> |
| 82 | <Description>Stores information about the plates that make |
| 83 | up a high-throughput screen. Plates may belong to more than |
| 84 | one screen, and have a many-to-many relationship to |
| 85 | screens.</Description> |
| 86 | <Element |
| 87 | Name= "Name" |
| 88 | DBLocation = "PLATES.NAME" |
| 89 | DataType = "string"/> |
| 90 | <Element |
| 91 | Name= "ExternalReference" |
| 92 | DBLocation = "PLATES.EXTERNAL_REFERENCE" |
| 93 | DataType = "string"> |
| 94 | <Description>LSID to an external reference describing |
| 95 | this plate in more detail.</Description> |
| 96 | </Element> |
| 97 | <Element |
| 98 | Name= "Screen" |
| 99 | DBLocation = "PLATES.SCREEN" |
| 100 | DataType = "reference" |
| 101 | RefersTo = "Screen"/> |
| 102 | <Element |
| 103 | Name= "Num_rows" |
| 104 | DBLocation = "PLATES.NUM_ROWS" |
| 105 | DataType = "integer"/> |
| 106 | <Element |
| 107 | Name= "Num_cols" |
| 108 | DBLocation = "PLATES.NUM_COLS" |
| 109 | DataType = "integer"/> |
| 110 | </SemanticType> |
| 111 | |
| 112 | <SemanticType |
| 113 | Name= "Well" |
| 114 | AppliesTo = "D"> |
| 115 | <Description>Stores information about the plates that make |
| 116 | up a high-throughput screen. Plates may belong to more than |
| 117 | one screen, and have a many-to-many relationship to |
| 118 | screens.</Description> |
| 119 | <Element |
| 120 | Name= "Treatment" |
| 121 | DBLocation = "WELL.TREATMENT" |
| 122 | DataType = "string"> |
| 123 | <Description>Text description of the treatment of this |
| 124 | Well.</Description> |
| 125 | </Element> |
| 126 | <Element |
| 127 | Name= "ExternalReference" |
| 128 | DBLocation = "WELL.EXTERNAL_REFERENCE" |
| 129 | DataType = "string"> |
| 130 | <Description>LSID to an external reference describing |
| 131 | the treatment of this Well</Description> |
| 132 | </Element> |
| 133 | <Element |
| 134 | Name= "Row" |
| 135 | DBLocation = "WELL.ROW" |
| 136 | DataType = "integer"/> |
| 137 | <Element |
| 138 | Name= "Column" |
| 139 | DBLocation = "WELL.COLUMN" |
| 140 | DataType = "integer"/> |
| 141 | <Element |
| 142 | Name= "Plate" |
| 143 | DBLocation = "WELL.PLATE" |
| 144 | DataType = "reference" |
| 145 | RefersTo = "Plate"/> |
| 146 | </SemanticType> |
| 147 | |
| 148 | <SemanticType |
| 149 | Name = "WellSample" |
| 150 | AppliesTo = "I"> |
| 151 | <Description>States that an Image was taken from a well, and |
| 152 | describes where the image was taken in the |
| 153 | well.</Description> |
| 154 | <Element |
| 155 | Name= "Well" |
| 156 | DBLocation = "WELL_POSITION.WELL" |
| 157 | DataType = "reference" |
| 158 | RefersTo = "Well"/> |
| 159 | <Element |
| 160 | Name= "Position" |
| 161 | DBLocation = "WELL_SAMPLE.POSITION" |
| 162 | DataType = "string"> |
| 163 | <Description>Replace this with a description of the |
| 164 | position within the well. What is needed? stage |
| 165 | position? Is physical position necessary or would sample |
| 166 | number do?</Description> |
| 167 | </Element> |
| 168 | </SemanticType> |
| 169 | |
| 170 | </SemanticTypeDefinitions> |
| 171 | </OME> |
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